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<div class="document">


<div class="line-block">
<div class="line">Copyright</div>
<div class="line-block">
<div class="line">Markus Wittmann, 2016-2018</div>
<div class="line">RRZE, University of Erlangen-Nuremberg, Germany</div>
<div class="line">markus.wittmann -at- fau.de or hpc -at- rrze.fau.de</div>
<div class="line"><br /></div>
<div class="line">Viktor Haag, 2016</div>
<div class="line">LSS, University of Erlangen-Nuremberg, Germany</div>
<div class="line"><br /></div>
<div class="line">Michael Hussnaetter, 2017-2018</div>
<div class="line">University of Erlangen-Nuremberg, Germany</div>
<div class="line">michael.hussnaetter -at- fau.de</div>
<div class="line"><br /></div>
</div>
<div class="line">This file is part of the Lattice Boltzmann Benchmark Kernels (LbmBenchKernels).</div>
<div class="line"><br /></div>
<div class="line">LbmBenchKernels is free software: you can redistribute it and/or modify</div>
<div class="line">it under the terms of the GNU General Public License as published by</div>
<div class="line">the Free Software Foundation, either version 3 of the License, or</div>
<div class="line">(at your option) any later version.</div>
<div class="line"><br /></div>
<div class="line">LbmBenchKernels is distributed in the hope that it will be useful,</div>
<div class="line">but WITHOUT ANY WARRANTY; without even the implied warranty of</div>
<div class="line">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the</div>
<div class="line">GNU General Public License for more details.</div>
<div class="line"><br /></div>
<div class="line">You should have received a copy of the GNU General Public License</div>
<div class="line">along with LbmBenchKernels.  If not, see &lt;<a class="reference external" href="http://www.gnu.org/licenses/">http://www.gnu.org/licenses/</a>&gt;.</div>
</div>
<p><strong>LBM Benchmark Kernels Documentation</strong></p>
<div class="contents topic" id="contents">
<p class="topic-title first">Contents</p>
<ul class="auto-toc simple">
<li><a class="reference internal" href="#introduction" id="id5">1&nbsp;&nbsp;&nbsp;Introduction</a></li>
<li><a class="reference internal" href="#compilation" id="id6">2&nbsp;&nbsp;&nbsp;Compilation</a><ul class="auto-toc">
<li><a class="reference internal" href="#debug-and-verification" id="id7">2.1&nbsp;&nbsp;&nbsp;Debug and Verification</a></li>
<li><a class="reference internal" href="#release-and-verification" id="id8">2.2&nbsp;&nbsp;&nbsp;Release and Verification</a></li>
<li><a class="reference internal" href="#benchmarking" id="id9">2.3&nbsp;&nbsp;&nbsp;Benchmarking</a></li>
<li><a class="reference internal" href="#compilers" id="id10">2.4&nbsp;&nbsp;&nbsp;Compilers</a></li>
<li><a class="reference internal" href="#floating-point-precision" id="id11">2.5&nbsp;&nbsp;&nbsp;Floating Point Precision</a></li>
<li><a class="reference internal" href="#cleaning" id="id12">2.6&nbsp;&nbsp;&nbsp;Cleaning</a></li>
<li><a class="reference internal" href="#options-summary" id="id13">2.7&nbsp;&nbsp;&nbsp;Options Summary</a></li>
</ul>
</li>
<li><a class="reference internal" href="#invocation" id="id14">3&nbsp;&nbsp;&nbsp;Invocation</a><ul class="auto-toc">
<li><a class="reference internal" href="#command-line-parameters" id="id15">3.1&nbsp;&nbsp;&nbsp;Command Line Parameters</a></li>
<li><a class="reference internal" href="#kernels" id="id16">3.2&nbsp;&nbsp;&nbsp;Kernels</a></li>
</ul>
</li>
<li><a class="reference internal" href="#id2" id="id17">4&nbsp;&nbsp;&nbsp;Benchmarking</a><ul class="auto-toc">
<li><a class="reference internal" href="#intel-compiler" id="id18">4.1&nbsp;&nbsp;&nbsp;Intel Compiler</a></li>
<li><a class="reference internal" href="#pinning" id="id19">4.2&nbsp;&nbsp;&nbsp;Pinning</a></li>
<li><a class="reference internal" href="#general-remarks" id="id20">4.3&nbsp;&nbsp;&nbsp;General Remarks</a></li>
<li><a class="reference internal" href="#padding" id="id21">4.4&nbsp;&nbsp;&nbsp;Padding</a></li>
</ul>
</li>
<li><a class="reference internal" href="#geometries" id="id22">5&nbsp;&nbsp;&nbsp;Geometries</a></li>
<li><a class="reference internal" href="#performance-results" id="id23">6&nbsp;&nbsp;&nbsp;Performance Results</a><ul class="auto-toc">
<li><a class="reference internal" href="#machine-specifications" id="id24">6.1&nbsp;&nbsp;&nbsp;Machine Specifications</a></li>
<li><a class="reference internal" href="#single-socket-results" id="id25">6.2&nbsp;&nbsp;&nbsp;Single Socket Results</a></li>
</ul>
</li>
<li><a class="reference internal" href="#licence" id="id26">7&nbsp;&nbsp;&nbsp;Licence</a></li>
<li><a class="reference internal" href="#acknowledgements" id="id27">8&nbsp;&nbsp;&nbsp;Acknowledgements</a></li>
<li><a class="reference internal" href="#bibliography" id="id28">9&nbsp;&nbsp;&nbsp;Bibliography</a></li>
</ul>
</div>
<div class="section" id="introduction">
<h1><a class="toc-backref" href="#id5">1&nbsp;&nbsp;&nbsp;Introduction</a></h1>
<p>The lattice Boltzmann (LBM) benchmark kernels are a collection of LBM kernel
implementations.</p>
<p><strong>AS SUCH THE LBM BENCHMARK KERNELS ARE NO FULLY EQUIPPED CFD SOLVER AND SOLELY
SERVES THE PURPOSE OF STUDYING POSSIBLE PERFORMANCE OPTIMIZATIONS AND/OR
EXPERIMENTS.</strong></p>
<p>Currently all kernels utilize a D3Q19 discretization and the
two-relaxation-time (TRT) collision operator <a class="citation-reference" href="#ginzburg-2008" id="id1">[ginzburg-2008]</a>.
All operations are carried out in double or single precision arithmetic.</p>
</div>
<div class="section" id="compilation">
<h1><a class="toc-backref" href="#id6">2&nbsp;&nbsp;&nbsp;Compilation</a></h1>
<p>The benchmark framework currently supports only Linux systems and the GCC and
Intel compilers. Every other configuration probably requires adjustment inside
the code and the makefiles. Furthermore some code might be platform or at least
POSIX specific.</p>
<p>The benchmark can be build via <tt class="docutils literal">make</tt> from the <tt class="docutils literal">src</tt> subdirectory. This will
generate one binary which hosts all implemented benchmark kernels.</p>
<p>Binaries are located under the <tt class="docutils literal">bin</tt> subdirectory and will have different names
depending on compiler and build configuration.</p>
<p>Compilation can target debug or release builds. Combined with both build types
verification can be enabled, which increases the runtime and hence is not
suited for benchmarking.</p>
<div class="section" id="debug-and-verification">
<h2><a class="toc-backref" href="#id7">2.1&nbsp;&nbsp;&nbsp;Debug and Verification</a></h2>
<pre class="literal-block">
make BUILD=debug BENCHMARK=off
</pre>
<p>Running <tt class="docutils literal">make</tt> with <tt class="docutils literal">BUILD=debug</tt> builds the debug version of
the benchmark kernels, where no optimizations are performed,  line numbers and
debug symbols are included as well as <tt class="docutils literal">DEBUG</tt> will be defined.  The resulting
binary will be found in the <tt class="docutils literal">bin</tt> subdirectory and named
<tt class="docutils literal"><span class="pre">lbmbenchk-linux-&lt;compiler&gt;-debug</span></tt>.</p>
<p>Specifying <tt class="docutils literal">BENCHMARK=off</tt> turns on verification
(<tt class="docutils literal">VERIFICATION=on</tt>), statistics (<tt class="docutils literal">STATISTICS=on</tt>), and VTK output
(<tt class="docutils literal">VTK_OUTPUT=on</tt>) enabled.</p>
<p>Please note that the generated binary will therefore
exhibit a poor performance.</p>
</div>
<div class="section" id="release-and-verification">
<h2><a class="toc-backref" href="#id8">2.2&nbsp;&nbsp;&nbsp;Release and Verification</a></h2>
<p>Verification with the debug builds can be extremely slow. Hence verification
capabilities can be build with release builds:</p>
<pre class="literal-block">
make BENCHMARK=off
</pre>
</div>
<div class="section" id="benchmarking">
<h2><a class="toc-backref" href="#id9">2.3&nbsp;&nbsp;&nbsp;Benchmarking</a></h2>
<p>To generate a binary for benchmarking run make with</p>
<pre class="literal-block">
make
</pre>
<p>As default <tt class="docutils literal">BENCHMARK=on</tt> and <tt class="docutils literal">BUILD=release</tt> is set, where
<tt class="docutils literal">BUILD=release</tt> turns optimizations on and <tt class="docutils literal">BENCHMARK=on</tt> disables
verfification, statistics, and VTK output.</p>
<p>See Options Summary below for further description of options which can be
applied, e.g. TARCH as well as the Benchmarking section.</p>
</div>
<div class="section" id="compilers">
<h2><a class="toc-backref" href="#id10">2.4&nbsp;&nbsp;&nbsp;Compilers</a></h2>
<p>Currently only the GCC and Intel compiler under Linux are supported. Between
both configuration can be chosen via <tt class="docutils literal"><span class="pre">CONFIG=linux-gcc</span></tt> or
<tt class="docutils literal"><span class="pre">CONFIG=linux-intel</span></tt>.</p>
</div>
<div class="section" id="floating-point-precision">
<h2><a class="toc-backref" href="#id11">2.5&nbsp;&nbsp;&nbsp;Floating Point Precision</a></h2>
<p>As default double precision data types are used for storing PDFs and floating
point constants. Furthermore, this is the default for the intrincis kernels.
With the <tt class="docutils literal">PRECISION=sp</tt> variable this can be changed to single precision.</p>
<pre class="literal-block">
make PRECISION=sp   # build for single precision kernels

make PRECISION=dp   # build for double precision kernels (defalt)
</pre>
</div>
<div class="section" id="cleaning">
<h2><a class="toc-backref" href="#id12">2.6&nbsp;&nbsp;&nbsp;Cleaning</a></h2>
<p>For each configuration and build (debug/release) a subdirectory under the
<tt class="docutils literal">src/obj</tt> directory is created where the dependency and object files are
stored.
With</p>
<pre class="literal-block">
make CONFIG=... BUILD=... clean
</pre>
<p>a specific combination is select and cleaned, whereas with</p>
<pre class="literal-block">
make clean-all
</pre>
<p>all object and dependency files are deleted.</p>
</div>
<div class="section" id="options-summary">
<h2><a class="toc-backref" href="#id13">2.7&nbsp;&nbsp;&nbsp;Options Summary</a></h2>
<p>Options that can be specified when building the suite with make:</p>
<table border="1" class="docutils">
<colgroup>
<col width="7%" />
<col width="12%" />
<col width="6%" />
<col width="75%" />
</colgroup>
<thead valign="bottom">
<tr><th class="head">name</th>
<th class="head">values</th>
<th class="head">default</th>
<th class="head">description</th>
</tr>
</thead>
<tbody valign="top">
<tr><td>BENCHMARK</td>
<td>on, off</td>
<td>on</td>
<td>If enabled, disables VERIFICATION, STATISTICS, VTK_OUTPUT. If disabled enables the three former options.</td>
</tr>
<tr><td>BUILD</td>
<td>debug, release</td>
<td>release</td>
<td>debug: no optimization, debug symbols, DEBUG defined. release: optimizations enabled.</td>
</tr>
<tr><td>CONFIG</td>
<td>linux-gcc, linux-intel</td>
<td>linux-intel</td>
<td>Select GCC or Intel compiler.</td>
</tr>
<tr><td>ISA</td>
<td>avx512, avx, sse</td>
<td>avx</td>
<td>Determines which ISA extension is used for macro definitions of the intrinsics. This is <em>not</em> the architecture the compiler generates code for.</td>
</tr>
<tr><td>OPENMP</td>
<td>on, off</td>
<td>on</td>
<td>OpenMP, i.e. threading support.</td>
</tr>
<tr><td>PRECISION</td>
<td>dp, sp</td>
<td>dp</td>
<td>Floating point precision used for data type, arithmetic, and intrincics.</td>
</tr>
<tr><td>STATISTICS</td>
<td>on, off</td>
<td>off</td>
<td>View statistics, like density etc, during simulation.</td>
</tr>
<tr><td>TARCH</td>
<td>--</td>
<td>--</td>
<td>Via TARCH the architecture the compiler generates code for can be overridden. The value depends on the chosen compiler.</td>
</tr>
<tr><td>VERIFICATION</td>
<td>on, off</td>
<td>off</td>
<td>Turn verification on/off.</td>
</tr>
<tr><td>VTK_OUTPUT</td>
<td>on, off</td>
<td>off</td>
<td>Enable/Disable VTK file output.</td>
</tr>
</tbody>
</table>
<p><strong>Suboptions for ``ISA=avx512``</strong></p>
<table border="1" class="docutils">
<colgroup>
<col width="20%" />
<col width="5%" />
<col width="5%" />
<col width="69%" />
</colgroup>
<thead valign="bottom">
<tr><th class="head">name</th>
<th class="head">values</th>
<th class="head">default</th>
<th class="head">description</th>
</tr>
</thead>
<tbody valign="top">
<tr><td>ADJ_LIST_MEM_TYPE</td>
<td>HBM</td>
<td><ul class="first last simple">
<li></li>
</ul>
</td>
<td>Determines memory location of adjacency list array, DRAM or HBM.</td>
</tr>
<tr><td>PDF_MEM_TYPE</td>
<td>HBM</td>
<td><ul class="first last simple">
<li></li>
</ul>
</td>
<td>Determines memory location of PDF array, DRAM or HBM.</td>
</tr>
<tr><td>SOFTWARE_PREFETCH_LOOKAHEAD_L1</td>
<td>int &gt;= 0</td>
<td>0</td>
<td>Software prefetch lookahead of elements into L1 cache, value is multiplied by vector size (<tt class="docutils literal">VSIZE</tt>).</td>
</tr>
<tr><td>SOFTWARE_PREFETCH_LOOKAHEAD_L2</td>
<td>int &gt;= 0</td>
<td>0</td>
<td>Software prefetch lookahead of elements into L2 cache, value is multiplied by vector size (<tt class="docutils literal">VSIZE</tt>).</td>
</tr>
</tbody>
</table>
<p>Please note this options require AVX-512 PF support of the target processor.</p>
</div>
</div>
<div class="section" id="invocation">
<h1><a class="toc-backref" href="#id14">3&nbsp;&nbsp;&nbsp;Invocation</a></h1>
<p>Running the binary will print among the GPL licence header a line like the following:</p>
<pre class="literal-block">
LBM Benchmark Kernels 0.1, compiled Jul  5 2017 21:59:22, type: verification
</pre>
<p>if verfication was enabled during compilation or</p>
<pre class="literal-block">
LBM Benchmark Kernels 0.1, compiled Jul  5 2017 21:59:22, type: benchmark
</pre>
<p>if verfication was disabled during compilation.</p>
<div class="section" id="command-line-parameters">
<h2><a class="toc-backref" href="#id15">3.1&nbsp;&nbsp;&nbsp;Command Line Parameters</a></h2>
<p>Running the binary with <tt class="docutils literal"><span class="pre">-h</span></tt> list all available parameters:</p>
<pre class="literal-block">
Usage:
./lbmbenchk -list
./lbmbenchk
    [-dims XxYxZ] [-geometry box|channel|pipe|blocks[-&lt;block size&gt;]] [-iterations &lt;iterations&gt;] [-lattice-dump-ascii]
    [-rho-in &lt;density&gt;] [-rho-out &lt;density] [-omega &lt;omega&gt;] [-kernel &lt;kernel&gt;]
    [-periodic-x]
    [-t &lt;number of threads&gt;]
    [-pin core{,core}*]
    [-verify]
    -- &lt;kernel specific parameters&gt;

-list           List available kernels.

-dims XxYxZ     Specify geometry dimensions.

-geometry blocks-&lt;block size&gt;
                Geometetry with blocks of size &lt;block size&gt; regularily layout out.
</pre>
<p>If an option is specified multiple times the last one overrides previous ones.
This holds also true for <tt class="docutils literal"><span class="pre">-verify</span></tt> which sets geometry dimensions,
iterations, etc, which can afterward be override, e.g.:</p>
<pre class="literal-block">
$ bin/lbmbenchk-linux-intel-release-dp -verfiy -dims 32x32x32
</pre>
<p>Kernel specific parameters can be obtained via selecting the specific kernel
and passing <tt class="docutils literal"><span class="pre">-h</span></tt> as parameter:</p>
<pre class="literal-block">
$ bin/lbmbenchk-linux-intel-release-dp -kernel kernel-name -- -h
...
Kernel parameters:
[-blk &lt;n&gt;] [-blk-[xyz] &lt;n&gt;]
</pre>
<p>A list of all available kernels can be obtained via <tt class="docutils literal"><span class="pre">-list</span></tt>:</p>
<pre class="literal-block">
$ ../bin/lbmbenchk-linux-gcc-debug-dp -list
Lattice Boltzmann Benchmark Kernels (LbmBenchKernels) Copyright (C) 2016, 2017 LSS, RRZE
This program comes with ABSOLUTELY NO WARRANTY; for details see LICENSE.
This is free software, and you are welcome to redistribute it under certain conditions.

LBM Benchmark Kernels 0.1, compiled Jul  5 2017 21:59:22, type: verification
Available kernels to benchmark:
   list-aa-pv-soa
   list-aa-ria-soa
   list-aa-soa
   list-aa-aos
   list-pull-split-nt-1s-soa
   list-pull-split-nt-2s-soa
   list-push-soa
   list-push-aos
   list-pull-soa
   list-pull-aos
   push-soa
   push-aos
   pull-soa
   pull-aos
   blk-push-soa
   blk-push-aos
   blk-pull-soa
   blk-pull-aos
</pre>
</div>
<div class="section" id="kernels">
<h2><a class="toc-backref" href="#id16">3.2&nbsp;&nbsp;&nbsp;Kernels</a></h2>
<p>The following list shortly describes available kernels:</p>
<ul class="simple">
<li><strong>push-soa/push-aos/pull-soa/pull-aos</strong>:
Unoptimized kernels (but stream/collide are already fused) using two grids as
source and destination. Implement push/pull semantics as well structure of
arrays (soa) or array of structures (aos) layout.</li>
<li><strong>blk-push-soa/blk-push-aos/blk-pull-soa/blk-pull-aos</strong>:
The same as the unoptimized kernels without the blk prefix, except that they support
spatial blocking, i.e. loop blocking of the three loops used to iterate over
the lattice. Here manual work sharing for OpenMP is used.</li>
<li><strong>aa-aos/aa-soa</strong>:
Straight forward implementation of AA pattern on full array with blocking support.
Manual work sharing for OpenMP is used. Domain is partitioned only along the x dimension.</li>
<li><strong>aa-vec-soa/aa-vec-sl-soa</strong>:
Optimized AA kernel with intrinsics on full array. aa-vec-sl-soa uses only
one loop for iterating over the lattice instead of three nested ones.</li>
<li><strong>list-push-soa/list-push-aos/list-pull-soa/list-pull-aos</strong>:
The same as the unoptimized kernels without the list prefix, but for indirect addressing.
Here only a 1D vector of is used to store the fluid nodes, omitting the
obstacles. An adjacency list is used to recover the neighborhood associations.</li>
<li><strong>list-pull-split-nt-1s-soa/list-pull-split-nt-2s-soa</strong>:
Optimized variant of list-pull-soa. Chunks of the lattice are processed as
once. Postcollision values are written back via nontemporal stores in 18 (1s)
or 9 (2s) loops.</li>
<li><strong>list-aa-aos/list-aa-soa</strong>:
Unoptimized implementation of the AA pattern for the 1D vector with adjacency
list. Supported are array of structures (aos) and structure of arrays (soa)
data layout is supported.</li>
<li><strong>list-aa-ria-soa</strong>:
Implementation of AA pattern with intrinsics for the 1D vector with adjacency
list. Furthermore it contains a vectorized even time step and run length
coding to reduce the loop balance of the odd time step.</li>
<li><strong>list-aa-pv-soa</strong>:
All optimizations of list-aa-ria-soa. Additional with partial vectorization
of the odd time step.</li>
</ul>
<p>Note that all array of structures (aos) kernels might require blocking
(depending on the domain size) to reach the performance of their structure of
arrays (soa) counter parts.</p>
<p>The following table summarizes the properties of the kernels. Here <strong>D</strong> means
direct addressing, i.e. full array, <strong>I</strong> means indirect addressing, i.e. 1D
vector with adjacency list, <strong>x</strong> means supported, whereas <strong>--</strong> means unsupported.
The loop balance B_l is computed for D3Q19 model with <strong>double precision</strong> floating
point for PDFs (8 byte) and 4 byte integers for the index (adjacency list).
As list-aa-ria-soa and list-aa-pv-soa support run length coding their effective
loop balance depends on the geometry. The effective loop balance is printed
during each run.</p>
<table border="1" class="docutils">
<colgroup>
<col width="29%" />
<col width="14%" />
<col width="14%" />
<col width="6%" />
<col width="10%" />
<col width="10%" />
<col width="16%" />
</colgroup>
<thead valign="bottom">
<tr><th class="head">kernel name</th>
<th class="head">prop. step</th>
<th class="head">data layout</th>
<th class="head">addr.</th>
<th class="head">parallel</th>
<th class="head">blocking</th>
<th class="head">B_l [B/FLUP]</th>
</tr>
</thead>
<tbody valign="top">
<tr><td>push-soa</td>
<td>OS</td>
<td>SoA</td>
<td>D</td>
<td>x</td>
<td>--</td>
<td>456</td>
</tr>
<tr><td>push-aos</td>
<td>OS</td>
<td>AoS</td>
<td>D</td>
<td>x</td>
<td>--</td>
<td>456</td>
</tr>
<tr><td>pull-soa</td>
<td>OS</td>
<td>SoA</td>
<td>D</td>
<td>x</td>
<td>--</td>
<td>456</td>
</tr>
<tr><td>pull-aos</td>
<td>OS</td>
<td>AoS</td>
<td>D</td>
<td>x</td>
<td>--</td>
<td>456</td>
</tr>
<tr><td>blk-push-soa</td>
<td>OS</td>
<td>SoA</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>456</td>
</tr>
<tr><td>blk-push-aos</td>
<td>OS</td>
<td>AoS</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>456</td>
</tr>
<tr><td>blk-pull-soa</td>
<td>OS</td>
<td>SoA</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>456</td>
</tr>
<tr><td>blk-pull-aos</td>
<td>OS</td>
<td>AoS</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>456</td>
</tr>
<tr><td>aa-soa</td>
<td>AA</td>
<td>SoA</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>304</td>
</tr>
<tr><td>aa-aos</td>
<td>AA</td>
<td>AoS</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>304</td>
</tr>
<tr><td>aa-vec-soa</td>
<td>AA</td>
<td>SoA</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>304</td>
</tr>
<tr><td>aa-vec-sl-soa</td>
<td>AA</td>
<td>SoA</td>
<td>D</td>
<td>x</td>
<td>x</td>
<td>304</td>
</tr>
<tr><td>list-push-soa</td>
<td>OS</td>
<td>SoA</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>528</td>
</tr>
<tr><td>list-push-aos</td>
<td>OS</td>
<td>AoS</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>528</td>
</tr>
<tr><td>list-pull-soa</td>
<td>OS</td>
<td>SoA</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>528</td>
</tr>
<tr><td>list-pull-aos</td>
<td>OS</td>
<td>AoS</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>528</td>
</tr>
<tr><td>list-pull-split-nt-1s</td>
<td>OS</td>
<td>SoA</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>376</td>
</tr>
<tr><td>list-pull-split-nt-2s</td>
<td>OS</td>
<td>SoA</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>376</td>
</tr>
<tr><td>list-aa-soa</td>
<td>AA</td>
<td>SoA</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>340</td>
</tr>
<tr><td>list-aa-aos</td>
<td>AA</td>
<td>AoS</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>340</td>
</tr>
<tr><td>list-aa-ria-soa</td>
<td>AA</td>
<td>SoA</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>304-342</td>
</tr>
<tr><td>list-aa-pv-soa</td>
<td>AA</td>
<td>SoA</td>
<td>I</td>
<td>x</td>
<td>x</td>
<td>304-342</td>
</tr>
</tbody>
</table>
</div>
</div>
<div class="section" id="id2">
<h1><a class="toc-backref" href="#id17">4&nbsp;&nbsp;&nbsp;Benchmarking</a></h1>
<p>Correct benchmarking is a nontrivial task. Whenever benchmark results should be
created make sure the binary was compiled with:</p>
<ul class="simple">
<li><tt class="docutils literal">BENCHMARK=on</tt> (default if not overriden) and</li>
<li><tt class="docutils literal">BUILD=release</tt> (default if not overriden) and</li>
<li>the correct ISA for macros (i.e. intrinsics) is used, selected via <tt class="docutils literal">ISA</tt> and</li>
<li>use <tt class="docutils literal">TARCH</tt> to specify the architecture the compiler generates code for.</li>
</ul>
<div class="section" id="intel-compiler">
<h2><a class="toc-backref" href="#id18">4.1&nbsp;&nbsp;&nbsp;Intel Compiler</a></h2>
<p>For the Intel compiler one can specify depending on the target ISA extension:</p>
<ul class="simple">
<li>SSE:          <tt class="docutils literal"><span class="pre">TARCH=-xSSE4.2</span></tt></li>
<li>AVX:          <tt class="docutils literal"><span class="pre">TARCH=-xAVX</span></tt></li>
<li>AVX2 and FMA: <tt class="docutils literal"><span class="pre">TARCH=-xCORE-AVX2,-fma</span></tt></li>
<li>AVX512:       <tt class="docutils literal"><span class="pre">TARCH=-xCORE-AVX512</span></tt></li>
<li>KNL:          <tt class="docutils literal"><span class="pre">TARCH=-xMIC-AVX512</span></tt></li>
</ul>
<p>Compiling for an architecture supporting AVX (Sandy Bridge, Ivy Bridge):</p>
<pre class="literal-block">
make ISA=avx TARCH=-xAVX
</pre>
<p>Compiling for an architecture supporting AVX2 (Haswell, Broadwell):</p>
<pre class="literal-block">
make ISA=avx TARCH=-xCORE-AVX2,-fma
</pre>
<p>WARNING: ISA is here still set to <tt class="docutils literal">avx</tt> as currently we have the FMA intrinsics not
implemented. This might change in the future.</p>
<!-- TODO: add isa=avx512 and add docu for knl -->
<!-- TODO: kein prefetching wenn AVX-512 PF nicht unterstuetz wird -->
<p>Compiling for an architecture supporting AVX-512 (Skylake):</p>
<pre class="literal-block">
make ISA=avx512 TARCH=-xCORE-AVX512
</pre>
<p>Please note that for the AVX512 gather kernels software prefetching for the
gather instructions is disabled per default.
To enable it set <tt class="docutils literal">SOFTWARE_PREFETCH_LOOKAHEAD_L1</tt> and/or
<tt class="docutils literal">SOFTWARE_PREFETCH_LOOKAHEAD_L2</tt> to a value greater than <tt class="docutils literal">0</tt> during
compilation. Note that this requires AVX-512 PF support from the target
processor.</p>
<p>Compiling for MIC architecture KNL supporting AVX-512 and AVX-512 PF:</p>
<pre class="literal-block">
make ISA=avx512 TARCH=-xMIC-AVX512
</pre>
<p>or optionally with software prefetch enabled:</p>
<pre class="literal-block">
make ISA=avx512 TARCH=-xMIC-AVX512 SOFTWARE_PREFETCH_LOOKAHEAD_L1=&lt;value&gt; SOFTWARE_PREFETCH_LOOKAHEAD_L2=&lt;value&gt;
</pre>
</div>
<div class="section" id="pinning">
<h2><a class="toc-backref" href="#id19">4.2&nbsp;&nbsp;&nbsp;Pinning</a></h2>
<p>During benchmarking pinning should be used via the <tt class="docutils literal"><span class="pre">-pin</span></tt> parameter. Running
a benchmark with 10 threads and pin them to the first 10 cores works like</p>
<pre class="literal-block">
$ bin/lbmbenchk-linux-intel-release-dp ... -t 10 -pin $(seq -s , 0 9)
</pre>
</div>
<div class="section" id="general-remarks">
<h2><a class="toc-backref" href="#id20">4.3&nbsp;&nbsp;&nbsp;General Remarks</a></h2>
<p>Things the binary does nor check or control:</p>
<ul class="simple">
<li>transparent huge pages: when allocating memory small 4 KiB pages might be
replaced with larger ones. This is in general a good thing, but if this is
really the case, depends on the system settings (check e.g. the status of
<tt class="docutils literal">/sys/kernel/mm/transparent_hugepage/enabled</tt>).
Currently <tt class="docutils literal">madvise(MADV_HUGEPAGE)</tt> is used for allocations which are aligned to
a 4 KiB page, which should be the case for the lattices.
This should result in huge pages except THP is disabled on the machine.
(NOTE: madvise() is used if <tt class="docutils literal">HAVE_HUGE_PAGES</tt> is defined, which is currently
hard coded defined in <tt class="docutils literal">Memory.c</tt>).</li>
<li>CPU/core frequency: For reproducible results the frequency of all cores
should be fixed.</li>
<li>NUMA placement policy: The benchmark assumes a first touch policy, which
means the memory will be placed at the NUMA domain the touching core is
associated with. If a different policy is in place or the NUMA domain to be
used is already full memory might be allocated in a remote domain. Accesses
to remote domains typically have a higher latency and lower bandwidth.</li>
<li>System load: interference with other application, especially on desktop
systems should be avoided.</li>
<li>Padding: For SoA based kernels the number of (fluid) nodes is automatically
adjusted so that no cache or TLB thrashing should occur. The parameters are
optimized for current Intel based systems. For more details look into the
padding section.</li>
<li>CPU dispatcher function: the compiler might add different versions of a
function for different ISA extensions. Make sure the code you might think is
executed is actually the code which is executed.</li>
</ul>
</div>
<div class="section" id="padding">
<h2><a class="toc-backref" href="#id21">4.4&nbsp;&nbsp;&nbsp;Padding</a></h2>
<p>With correct padding cache and TLB thrashing can be avoided. Therefore the
number of (fluid) nodes used in the data layout is artificially increased.</p>
<p>Currently automatic padding is active for kernels which support it. It can be
controlled via the kernel parameter (i.e. parameter after the <tt class="docutils literal"><span class="pre">--</span></tt>)
<tt class="docutils literal"><span class="pre">-pad</span></tt>. Supported values are <tt class="docutils literal">auto</tt> (default), <tt class="docutils literal">no</tt> (to disable padding),
or a manual padding.</p>
<p>Automatic padding tries to avoid cache and TLB thrashing and pads for a 32
entry (huge pages) TLB with 8 sets and a 512 set (L2) cache. This reflects the
parameters of current Intel based processors.</p>
<p>Manual padding is done via a padding string and has the format
<tt class="docutils literal"><span class="pre">mod_1+offset_1(,mod_n+offset_n)</span></tt>, which specifies numbers of bytes.
SoA data layouts can exhibit TLB thrashing. Therefore we want to distribute the
19 pages with one lattice (36 with two lattices) we are concurrently accessing
over as much sets in the TLB as possible.
This is controlled by the distance between the accessed pages, which is the
number of (fluid) nodes in between them and can be adjusted by adding further
(fluid) nodes.
We want the distance d (in bytes) between two accessed pages to be e.g.
<strong>d % (PAGE_SIZE * TLB_SETS) = PAGE_SIZE</strong>.
This would distribute the pages evenly over the sets. Hereby <strong>PAGE_SIZE * TLB_SETS</strong>
would be our <tt class="docutils literal">mod_1</tt> and <strong>PAGE_SIZE</strong> (after the =) our <tt class="docutils literal">offset_1</tt>.
Measurements show that with only a quarter of half of a page size as offset
higher performance is achieved, which is done by automatic padding.
On top of this padding more paddings can be added. They are just added to the
padding string and are separated by commas.</p>
<p>A zero modulus in the padding string has a special meaning. Here the
corresponding offset is just added to the number of nodes. A padding string
like <tt class="docutils literal"><span class="pre">-pad</span> 0+16</tt> would at a static padding of two nodes (one node = 8 b).</p>
</div>
</div>
<div class="section" id="geometries">
<h1><a class="toc-backref" href="#id22">5&nbsp;&nbsp;&nbsp;Geometries</a></h1>
<p>TODO: supported geometries: channel, pipe, blocks, fluid</p>
</div>
<div class="section" id="performance-results">
<h1><a class="toc-backref" href="#id23">6&nbsp;&nbsp;&nbsp;Performance Results</a></h1>
<p>The sections lists performance values measured on several machines for
different kernels and geometries and <strong>double precision</strong> floating point data/arithmetic.
The <strong>RFM</strong> column denotes the expected performance as predicted by the
Roofline performance model <a class="citation-reference" href="#williams-2008" id="id3">[williams-2008]</a>.
For performance prediction of each kernel a memory bandwidth benchmark is used
which mimics the kernels memory access pattern and the kernel's loop balance
(see <a class="citation-reference" href="#kernels" id="id4">[kernels]</a> for details).</p>
<div class="section" id="machine-specifications">
<h2><a class="toc-backref" href="#id24">6.1&nbsp;&nbsp;&nbsp;Machine Specifications</a></h2>
<p><strong>Ivy Bridge, Intel Xeon E5-2660 v2</strong></p>
<ul class="simple">
<li>Ivy Bridge architecture, AVX</li>
<li>10 cores, 2.2 GHz</li>
<li>SMT enabled</li>
<li>memoy bandwidth:<ul>
<li>copy-19             32.7 GB/s</li>
<li>copy-19-nt-sl       35.6 GB/s</li>
<li>update-19           37.4 GB/s</li>
</ul>
</li>
</ul>
<p><strong>Haswell, Intel Xeon E5-2695 v3</strong></p>
<ul class="simple">
<li>Haswell architecture, AVX2, FMA</li>
<li>14 cores, 2.3 GHz</li>
<li>2 x 7 cores in cluster-on-die (CoD) mode enabled</li>
<li>SMT enabled</li>
<li>memory bandwidth:<ul>
<li>copy-19              47.3 GB/s</li>
<li>copy-19-nt-sl        47.1 GB/s</li>
<li>update-19            44.0 GB/s</li>
</ul>
</li>
</ul>
<p><strong>Broadwell, Intel Xeon E5-2630 v4</strong></p>
<ul class="simple">
<li>Broadwell architecture, AVX2, FMA</li>
<li>10 cores, 2.2 GHz</li>
<li>SMT disabled</li>
<li>memory bandwidth:<ul>
<li>copy-19              48.0 GB/s</li>
<li>copy-nt-sl-19        48.2 GB/s</li>
<li>update-19            51.1 GB/s</li>
</ul>
</li>
</ul>
<p><strong>Skylake, Intel Xeon Gold 6148</strong></p>
<ul class="simple">
<li>Skylake server architecture, AVX2, AVX512, 2 FMA units</li>
<li>20 cores, 2.4 GHz</li>
<li>SMT enabled</li>
<li>memory bandwidth:<ul>
<li>copy-19              89.7 GB/s</li>
<li>copy-19-nt-sl        92.4 GB/s</li>
<li>update-19            93.6 GB/s</li>
</ul>
</li>
</ul>
<p><strong>Zen, AMD EPYC 7451</strong></p>
<ul class="simple">
<li>Zen architecture, AVX2, FMA</li>
<li>24 cores, 2.3 GHz</li>
<li>SMT enabled</li>
<li>memory bandwidth:<ul>
<li>copy-19              111.9 GB/s</li>
<li>copy-19-nt-sl        111.7 GB/s</li>
<li>update-19            109.2 GB/s</li>
</ul>
</li>
</ul>
<p><strong>Zen, AMD Ryzen 7 1700X</strong></p>
<ul class="simple">
<li>Zen architecture, AVX2, FMA</li>
<li>8 cores, 3.4 GHz</li>
<li>SMT enabled</li>
<li>memory bandwidth:<ul>
<li>copy-19              27.2 GB/s</li>
<li>copy-19-nt-sl        27.1 GB/s</li>
<li>update-19            26.1 GB/s</li>
</ul>
</li>
</ul>
</div>
<div class="section" id="single-socket-results">
<h2><a class="toc-backref" href="#id25">6.2&nbsp;&nbsp;&nbsp;Single Socket Results</a></h2>
<ul class="simple">
<li>Geometry dimensions are for all measurements 500x100x100 nodes.</li>
<li>Note the <strong>different scaling on the y axis</strong> of the plots!</li>
</ul>
<table border="1" class="docutils">
<colgroup>
<col width="100%" />
</colgroup>
<tbody valign="top">
<tr><td>Ivy Bridge, Intel Xeon E5-2660 v2, Double Precision</td>
</tr>
<tr><td><img alt="perf_emmy_dp" src="images/benchmark-emmy-dp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Ivy Bridge, Intel Xeon E5-2660 v2, Single Precision</td>
</tr>
<tr><td><img alt="perf_emmy_sp" src="images/benchmark-emmy-sp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Haswell, Intel Xeon E5-2695 v3, Double Precision</td>
</tr>
<tr><td><img alt="perf_hasep1_dp" src="images/benchmark-hasep1-dp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Haswell, Intel Xeon E5-2695 v3, Single Precision</td>
</tr>
<tr><td><img alt="perf_hasep1_sp" src="images/benchmark-hasep1-sp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Broadwell, Intel Xeon E5-2630 v4, Double Precision</td>
</tr>
<tr><td><img alt="perf_meggie_dp" src="images/benchmark-meggie-dp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Broadwell, Intel Xeon E5-2630 v4, Single Precision</td>
</tr>
<tr><td><img alt="perf_meggie_sp" src="images/benchmark-meggie-sp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Skylake, Intel Xeon Gold 6148, Double Precision</td>
</tr>
<tr><td><img alt="perf_skylakesp2_dp" src="images/benchmark-skylakesp2-dp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Skylake, Intel Xeon Gold 6148, Single Precision</td>
</tr>
<tr><td><img alt="perf_skylakesp2_sp" src="images/benchmark-skylakesp2-sp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Zen, AMD Ryzen 7 1700X, Double Precision</td>
</tr>
<tr><td><img alt="perf_summitridge1_dp" src="images/benchmark-summitridge1-dp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Zen, AMD Ryzen 7 1700X, Single Precision</td>
</tr>
<tr><td><img alt="perf_summitridge1_sp" src="images/benchmark-summitridge1-sp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Zen, AMD EPYC 7451, Double Precision</td>
</tr>
<tr><td><img alt="perf_naples1_dp" src="images/benchmark-naples1-dp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
<tr><td>Zen, AMD EPYC 7451, Single Precision</td>
</tr>
<tr><td><img alt="perf_naples1_sp" src="images/benchmark-naples1-sp.png" style="width: 1000.0px; height: 250.0px;" /></td>
</tr>
</tbody>
</table>
</div>
</div>
<div class="section" id="licence">
<h1><a class="toc-backref" href="#id26">7&nbsp;&nbsp;&nbsp;Licence</a></h1>
<p>The Lattice Boltzmann Benchmark Kernels are licensed under GPLv3.</p>
</div>
<div class="section" id="acknowledgements">
<h1><a class="toc-backref" href="#id27">8&nbsp;&nbsp;&nbsp;Acknowledgements</a></h1>
<p>If you use the benchmark kernels you can cite us:</p>
<p>M. Wittmann, V. Haag, T. Zeiser, H. Köstler, and G. Wellein: Lattice Boltzmann
Benchmark Kernels as a Testbed for Performance Analysis, (2018), Computer &amp;
Fluids, Special Issue DSFD2017. doi:10.1016/j.compfluid.2018.03.030.</p>
<p>Bibtex entry:</p>
<pre class="literal-block">
&#64;article{wittmann-2018,
    author  = {M. Wittmann and V. Haag and T. Zeiser and H. K\&quot;ostler and G. Wellein},
    title   = {Lattice {B}oltzmann benchmark kernels as a testbed for performance analysis},
    journal = {Computers \&amp; Fluids},
    year    = {2018},
    issn    = {0045-7930},
    doi     = {10.1016/j.compfluid.2018.03.030},
}
</pre>
<p>This work was funded by BMBF, grant no. 01IH15003A (project SKAMPY).</p>
<p>This work was funded by KONWHIR project OMI4PAPS.</p>
</div>
<div class="section" id="bibliography">
<h1><a class="toc-backref" href="#id28">9&nbsp;&nbsp;&nbsp;Bibliography</a></h1>
<table class="docutils citation" frame="void" id="ginzburg-2008" rules="none">
<colgroup><col class="label" /><col /></colgroup>
<tbody valign="top">
<tr><td class="label"><a class="fn-backref" href="#id1">[ginzburg-2008]</a></td><td>I. Ginzburg, F. Verhaeghe, and D. d'Humières.
Two-relaxation-time lattice Boltzmann scheme: About parametrization, velocity, pressure and mixed boundary conditions.
Commun. Comput. Phys., 3(2):427-478, 2008.</td></tr>
</tbody>
</table>
<table class="docutils citation" frame="void" id="williams-2008" rules="none">
<colgroup><col class="label" /><col /></colgroup>
<tbody valign="top">
<tr><td class="label"><a class="fn-backref" href="#id3">[williams-2008]</a></td><td>S. Williams, A. Waterman, and D. Patterson.
Roofline: an insightful visual performance model for multicore architectures.
Commun. ACM, 52(4):65-76, Apr 2009. doi:10.1145/1498765.1498785</td></tr>
</tbody>
</table>
<p>Document was generated at 2018-06-06 10:38.</p>
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